黄唇鱼(Bahaba flavolabiata)的全基因组测序和基因组特征研究

黄唇鱼(Bahaba flavolabiata)为国家二级重点保护野生动物、IUCN(世界自然保护联盟)红色名录的极度濒危物种(CR)。基于其样本数量极其有限,全基因组研究可以提供大量与重要性状相关的功能基因和分子标记,从而揭示其重要生命现象的遗传机制。采用二代测序技术于2018年5月完成了黄唇鱼基因组精细图的测序,分析结果表明,测序得到约202 Gb的高质量数据,总测序深度约为317×;组装得到的基因组大小为637.43 Mb,Contig N50约为88 Kb,Scaffold N50约为4.65 Mb;重复序列约142.72 Mb,占比22.39%,预测得到23743个基因、920个t RNA、85个rRNA、176个假基因;98.46%的基因可以注释到NR、GO等数据库中;有67个基因家族是黄唇鱼所特有的。本研究从单碱基错误率、核心基因完整性及二代Reads比对分析3个方面对黄唇鱼基因组精细图的组装结果进行了评估,结果显示所组装的基因区的完整性较好。黄唇鱼基因组序列图谱的绘制完成,对于黄唇鱼自然资源的保护和种质资源挖掘具有极其重要的科学意义。     

地衣芽孢杆菌W10菌液和抗菌蛋白对桃果实贮藏保鲜效果的影响

以桃‘沪油018’(Amygdalus persica ‘Huyou 018’)果实为试验材料,经地衣芽孢杆菌W10菌液及其抗菌蛋白浸果后常温条件下(25 ℃)贮藏,定期测量桃果各项保鲜指标。结果表明,与对照桃果实比较,地衣芽孢杆菌W10菌液和抗菌蛋白处理可提高桃果实色泽、硬度和可溶性固形物含量,显著降低桃果失重率和腐烂率。经菌液处理桃果腐烂率降低至20%,菌液抑制桃果腐烂效果与多菌灵类似。菌液和抗菌蛋白在提高贮藏期桃果品质方面差异不显著。地衣芽孢杆菌W10菌液和抗菌蛋白应用于采后桃果的贮藏保鲜效果较好,潜力较大。     

Distinct genomic traits of acral and mucosal melanomas revealed by targeted mutational profiling

The incidence of melanoma is rising globally including China. Comparing to Caucasians, the incidence of non‐cutaneous melanomas is significantly higher in Chinese. Herein, we performed genomic profiling of 89 Chinese surgically resected primary melanomas, including acral (n = 54), cutaneous (n = 22), and mucosal (n = 13), by hybrid capture‐based next‐generation sequencing. We show that mucosal melanomas tended to harbor more pathogenic mutations than other types of melanoma, though the biological significance of this finding remains uncertain. Chromosomal arm‐level alterations including 6q, 9p, and 10p/q loss were highly recurrent in all subtypes, but mucosal melanoma was significantly associated with increased genomic instability. Importantly, 7p gain significantly correlated with unfavorable clinical outcomes in non‐cutaneous melanomas, representing an intriguing prognostic biomarker of those subtypes. Furthermore, focal amplification of 4q12 (KIT, KDR, and PDGFRα) and RAD51 deletion were more abundant in mucosal melanoma, while NOTCH2 amplification was enriched in acral melanoma. Additionally, cutaneous melanomas had higher mutation load than acral melanomas, while mucosal melanomas did not differ from other subtypes in mutation burden. Together, our data revealed important features of acral and mucosal melanomas in Chinese including distinctive driver mutation pattern and increased genomic instability. These findings highlight the possibilities of combination therapies in the clinical management of melanoma.     

α-荼异硫氰酸酯诱导小鼠胆汁淤积性肝纤维化及其炎症通路*

目的: 探讨α-荼异硫氰酸酯(ANIT)诱导的胆汁淤积性肝纤维化的发展及其炎症通路。方法: 将15只体重为(23±2) g的129/Sv小鼠随机分为对照组(n=5)和实验组(n=10)。对照组常规饲料喂养,实验组小鼠给予0.05% ANIT饲料食饲。实验组分别在14 d和28 d各处死5只小鼠,收集胆囊、血清、肝脏等标本。按试剂盒程序检测胆汁淤积生化指标,组织病理学评估肝细胞损伤程度,Q-PCR和WB分析肝纤维化、炎症反应等水平。结果: 与对照组相比,造模第2周ANIT -14 d组(A-D14)中的主要胆汁淤积指标总胆汁酸(TBA)从(3.2±0.9) μmol/L显著增加至(31.6±4.3) μmol/L,肝损伤指标谷草转氨酶(AST)和谷丙转氨酶(ALT)也显著升高(P＜0.05);纤维化因子金属蛋白酶组织抑制因子1(TIMP-1)、单核细胞趋化因子(MCP-1)、I型胶原蛋白(Collagen I)表达高于对照组(P＜0.05);Collagen I和α-SMA纤维化蛋白表达均上调;肝脏胶原纤维大量沉积,纤维化已产生(P＜0.05)。炎症因子表达高于对照组,JNK、c-Jun、STAT3等均被激活(P＜0.05)。ANIT-28 d组(A-D28)中除AST、基质金属蛋白酶2(MMP-2),Collagen I指标稍有降低外,其余胆汁淤积、肝损伤、肝纤维化、炎症等指标继续上调或保持稳定(P＜ 0.05)。结论: 0.05%的ANIT饲料干预14 d,小鼠即发生明显的胆汁淤积性肝纤维化;28 d后,胆汁淤积性肝纤维化趋于稳定;JNK炎症通路在肝纤维化的发生发展中起着至关重要的作用。     

The intronic promoter of Actin4 mediates high-level transgene expression mainly in the wing and epidermis of silkworms

Transgenic Research - The cytoplasmic actin gene Actin4 (A4) in silkworm (Bombyx mori) was isolated 20 years ago and has a distal promoter upstream of the first exon and a proximal...     

Integration of high-throughput analytics and cell imaging enables direct early productivity and product quality assessment during Chinese Hamster ovary cell line development for a complex multi-subunit vaccine antigen

Mammalian cell line generation typically includes stable pool generation, single cell cloning and several rounds of clone selection based on cell growth, productivity and product quality criteria. Individual clone expansion and phenotype-based ranking is performed initially for hundreds or thousands of mini-scale cultures, representing the major operational challenge during cell line development. Automated cell culture and analytics systems have been developed to enable high complexity clone selection workflows; while ensuring traceability, safety, and quality of cell lines intended for biopharmaceutical applications. Here we show that comprehensive and quantitative assessment of cell growth, productivity, and product quality attributes are feasible at the 200–1,200 cell colony stage, within 14 days of the single cell cloning in static 96-well plate culture. The early cell line characterization performed prior to the clone expansion in suspension culture can be used for a single-step, direct selection of high quality clones. Such clones were comparable, both in terms of productivity and critical quality attributes (CQAs), to the top-ranked clones identified using an established iterative clone screening approach. Using a complex, multi-subunit antigen as a model protein, we observed stable CQA profiles independently of the cell culture format during the clonal expansion as well as in the batch and fed-batch processes. In conclusion, we propose an accelerated clone selection approach that can be readily incorporated into various cell line development workstreams, leading to significant reduction of the project timelines and resource requirements.     

黄芩配伍川贝母后黄芩中主要化学成分含量变化及抗肺炎作用研究

本文旨在探究黄芩川贝母不同比例配伍后对黄芩中主要化学成分含量影响及等比配伍后抗肺炎作用。将黄芩川贝母按3∶0、3∶1、3∶2、3∶3、2∶3、1∶3、0∶3比例配伍后,水提取,高效液相色谱法测定黄芩苷、汉黄芩苷、黄芩素、汉黄芩素含量。选择健康ICR小鼠36只,随机分为6组,分别为空白组、LPS组、阳性药组、黄芩组、川贝母组、黄芩-川贝母组,每组6只,连续给药6天;第7天,实验组腹腔注射LPS 10 mg/kg,空白组注射等体积的生理盐水,LPS造模6 h,检测各组小鼠血清中IL-1β、IL-6、TNF-α水平,光镜下观察各组小鼠肺组织病理变化。结果发现黄芩川贝母配伍比例在3∶1、3∶2、3∶3、2∶3时,黄芩苷、汉黄芩苷、黄芩素、汉黄芩素总含量变化小于6%,当配伍比例达到1∶3时,四种化学成分的总量下降了23.7%。黄芩川贝母等比配伍后可显著降低小鼠血清中IL-1β、IL-6、TNF-α含量、改善肺组织病理形态,其治疗效果优于单药组。黄芩川贝母配伍比例控制在3∶1~2∶3为宜,且二者在抗肺炎中具有协同作用。